PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN13609.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 501aa MW: 54273 Da PI: 6.7275

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN13609.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.6e-40	137	197	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s KHN13609.1 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSA 197 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	134	194	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	139	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	141	195	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	143	179	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MSEVKDPAIK LFGKTIPVPE IPRGSAGAPA SSSGDVVDDS VDASSTNSSR ESHTKRDALG 60 KDVDKDTLGE KPTDDKKEDG APTQSSEEVT NLDTASGSCE ESVALSTERE ATTLKTTKTE 120 EEQSETSNSQ DKNLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT 180 MRNVPVGAGR RKNKSSASHY RQITVSEAAL QNPRTDLPNG AYHPSLKCNG TVLTFGTDTP 240 LCESMASVLN LADKTMPNYT RNGFHKPEEL RIPVPHASGE KGDDQSNKSS VTSTTSVEGA 300 ITNGPKEQVV QNCQSFPPQV PYFPGTPWPI PWNPVQWSSP VPPPAFCPPG FTMPFYPATA 360 YWGCAVPGTW NIPWLVQPSS PNGATPNSGP NSPTLGKHSR EDSTFKSNES GGEDGHSKEN 420 NKEKSLWVPK TLRIDDSEAA KSSIWATLGI KNDKADSVPG GTLFKAFPSK HDDKNHSMQA 480 SPVLQANPAA LSRSLNFHET S

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MSEVKDPAIK LFGKTIPVPE IPRGSAGAPA SSSGDVVDDS VDASSTNSSR ESHTKRDALG  60
KDVDKDTLGE KPTDDKKEDG APTQSSEEVT NLDTASGSCE ESVALSTERE ATTLKTTKTE  120
EEQSETSNSQ DKNLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKSSASHY RQITVSEAAL QNPRTDLPNG AYHPSLKCNG TVLTFGTDTP  240
LCESMASVLN LADKTMPNYT RNGFHKPEEL RIPVPHASGE KGDDQSNKSS VTSTTSVEGA  300
ITNGPKEQVV QNCQSFPPQV PYFPGTPWPI PWNPVQWSSP VPPPAFCPPG FTMPFYPATA  360
YWGCAVPGTW NIPWLVQPSS PNGATPNSGP NSPTLGKHSR EDSTFKSNES GGEDGHSKEN  420
NKEKSLWVPK TLRIDDSEAA KSSIWATLGI KNDKADSVPG GTLFKAFPSK HDDKNHSMQA  480
SPVLQANPAA LSRSLNFHET S

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003551736.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A0B2Q0U2	0.0	A0A0B2Q0U2_GLYSO; Dof zinc finger protein DOF5.2
TrEMBL	I1N4E5	0.0	I1N4E5_SOYBN; Uncharacterized protein
STRING	GLYMA18G49520.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-103	cycling DOF factor 2

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]